Loading a Gene

To start loading a gene, select "Candidate > Load..." as pictured below:

Step 1 - Search

In the "Open a new Candidate" screen that pops up, enter the search string for your gene, select a species from the drop-down list, and click "Go". The search will continue until it has found all related genes. You may start a new search simply by inserting a new search string and hitting "Go". The search string may consist of any of the following:


ID Type Example
Official Gene Symbol ss18
Ensembl Gene ID ENSG00000141380
Ensembl Transcript ID ENST00000269137
Ensembl Protein ID ENSP00000269138
InterPro ID IPI00018069
Microarray Probe ID 202816_s_at, Hs.153221.0.A1_3p_a_at, A_14_P111944
EMBL ID S79894, CR542103
GO ID 0005634
RefSeq DNA Accession NM_005637
RefSeq Peptide Accession NP_005628
Entrez Gene ID 6760
Uniprot/Swissprot ID Q15532, SSXT_HUMAN
OMIM ID 600192

Here is an example search for the SS18 Gene:

Step 2 - Select a Gene

Once the gene you are searching for has displayed, click on the gene. If the gene you are in search for does not display, try another search string. If you continue to have trouble, search the Ensembl site at http://ensembl.org. If you can find it on the ensembl site, just copy the Ensembl Gene ID and search GANT with that id. If you cannot find it on the Ensembl site, you will not be able to find it in GANT while it is using Ensembl as a data source.

Selecting the gene will provide further details about the gene (chromosome location and number of alternative transcripts) as shown here:

Step 3 - Select a Transcript

Selecting the gene from the previous step likely returned one result displaying the chromosome location and number of transcripts. Click on the gene and you will then see the transcripts from which you may choose as shown here:

Click on the transcript you wish to use and then click "Open".

The gene you have chosen is now loading in GANT. A status of completion displays at the bottom. This may take a while depending on the traffic between you and your Ensembl host and the size of the gene and its annotation.

Next, you may wish to go through the Navigating a Gene documentation.